Author

Noémi Ligeti-Nagy

ELTE Research Centre for LinguisticsORCID 0000-0003-0851-7621Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:benchmarking· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1 Research Focus:protein structure prediction· 1 Approach:transformer / foundation model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Babett Bodnár· 2 shared Balázs LigetiiD· 2 shared János JuhásziD· 2 shared István Szepesi-NagyiD· 1 shared Judit Juhász· 1 shared Sándor PongoriD· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 13 mutual co-author links

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2 shared papersBioinformatics

Babett Bodnár

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2 papers

Recent·Most cited

BioinformaticsBioinformatics AdvancesPeer-reviewedDec 26, 2024

ProkBERT PhaStyle: Accurate Phage Lifestyle Prediction with Pretrained Genomic Language Models

Judit Juhász, Noémi Ligeti-Nagy, Babett Bodnár…·Balázs Ligeti

ProkBERT PhaStyle uses genomic language models to predict phage lifestyles, outperforming existing methods in accuracy and speed.

4 citations

whole-genome sequencingdeep learning

𝕏 PostBluesky

BioinformaticsFrontiers in MicrobiologyPeer-reviewedJan 11, 2024

ProkBERT Family: Genomic Language Models for Microbiome Applications

Balázs Ligeti, István Szepesi-Nagy, Babett Bodnár…·János Juhász

The paper introduces ProkBERT, a genomic language model family for microbiome analysis, showing strong performance in promoter prediction and phage identification.

30 citationstop 4%

E. colimetagenomics

𝕏 PostBluesky