Author

János Juhász

Semmelweis UniversityORCID 0000-0002-1307-7387Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1 Organism:mouse· 1

Frequent Co-Authors

Babett Bodnár· 2 shared Balázs LigetiiD· 2 shared Noémi Ligeti-NagyiD· 2 shared Attila Csikász-NagyiD· 1 shared Bence T. Gaizer· 1 shared Christian I. HongiD· 1 shared Gang WuiD· 1 shared Hee‐Woong LimiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersBioinformatics

Babett Bodnár

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3 papers

Recent·Most cited

Molecular BiologybioRxivPreprintJul 30, 2026

Circadian clock regulates intestinal epithelial cell differentiation via NOTCH/Hes1 oscillations

Sevde Goker, Sean Suengwon Lee, Bence T. Gaizer…·Christian I. Hong

This study identifies circadian regulation of intestinal epithelial cell differentiation through NOTCH/Hes1 oscillations in mouse enteroids.

1 citation

mousebulk RNA-seq

BioinformaticsBioinformatics AdvancesPeer-reviewedDec 26, 2024

ProkBERT PhaStyle: Accurate Phage Lifestyle Prediction with Pretrained Genomic Language Models

Judit Juhász, Noémi Ligeti-Nagy, Babett Bodnár…·Balázs Ligeti

ProkBERT PhaStyle uses genomic language models to predict phage lifestyles, outperforming existing methods in accuracy and speed.

4 citations

whole-genome sequencingdeep learning

BioinformaticsFrontiers in MicrobiologyPeer-reviewedJan 11, 2024

ProkBERT Family: Genomic Language Models for Microbiome Applications

Balázs Ligeti, István Szepesi-Nagy, Babett Bodnár…·János Juhász

The paper introduces ProkBERT, a genomic language model family for microbiome analysis, showing strong performance in promoter prediction and phage identification.

30 citationstop 4%

E. colimetagenomics