Author

Linda Chui

University of AlbertaORCID 0000-0003-0851-9803Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Organism:E. coli· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Rahat ZaheeriD· 2 shared Aleisha R. ReimeriD· 1 shared C. R. LaingiD· 1 shared Cecile L. TremblayiD· 1 shared Chrystal L. BerryiD· 1 shared Emmanuel W. BumunangiD· 1 shared Eric Marinier· 1 shared Franco PagottoiD· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

Rahat ZaheerORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

MicrobiologyeLifePeer-reviewedJan 17, 2025

Persistent cross-species transmission systems dominate Shiga toxin-producing Escherichia coli O157:H7 epidemiology in a high incidence region: a genomic epidemiology study

Gillian A.M. Tarr, Linda Chui, Kim Stanford…·Tim Angus McAllister

This study identifies persistent cross-species transmission systems between cattle and humans as a major driver of E. coli O157:H7 epidemiology in Alberta, with a shift toward more virulent stx2a-only strains.

1 citation

E. coliwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsNucleic Acids ResearchPeer-reviewedAug 1, 2017

Neptune: A Bioinformatics Tool for Rapid Discovery of Genomic Variation in Bacterial Populations

Eric Marinier, Rahat Zaheer, Chrystal L. Berry…·Gary Van Domselaar

Neptune identifies differentially abundant genomic loci in bacterial populations using k-mer matching and probabilistic models, showing sensitivity and specificity on simulated and real data.

22 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky