Author

Ivan de la Rubia

Australian National UniversityORCID 0000-0003-0861-566XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:long-read sequencing· 2 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Akanksha SrivastavaiD· 2 shared Eduardo EyrasiD· 2 shared Joel A. IndiiD· 2 shared Angel Ruiz-Reche· 1 shared Julien LagardeiD· 1 shared M. Mar AlbàiD· 1 shared Sílvia Carbonell SalaiD· 1 shared Wenjing Xue· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Akanksha SrivastavaORCID

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2 papers

Recent·Most cited

BioinformaticsGenome biologyPeer-reviewedJul 8, 2022

RATTLE: Reference-free reconstruction and quantification of transcriptomes from Nanopore sequencing

Ivan de la Rubia, Akanksha Srivastava, Wenjing Xue…·Eduardo Eyras

RATTLE reconstructs and quantifies transcripts from Nanopore sequencing without a reference genome, showing accuracy and scalability across simulated and experimental data.

50 citations

humanlong-read sequencing

𝕏 PostBluesky

BioinformaticsGenome biologyPeer-reviewedNov 29, 2019

ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning

Angel Ruiz-Reche, Akanksha Srivastava, Joel A. Indi…·Eduardo Eyras

ReorientExpress is a reference-free tool that uses deep learning to orient nanopore cDNA reads, improving transcriptome analysis without requiring a genome or transcriptome reference.

13 citations

long-read sequencingdeep learning

𝕏 PostBluesky