Author

Pin‐Yu Chen

IBM Research - Thomas J. Watson Research CenterORCID 0000-0003-1039-8369Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Assay:Hi-C· 1 Assay:imaging· 1

Frequent Co-Authors

Alfred O. HeroiD· 1 shared Chang‐Le CheniD· 1 shared Indika RajapakseiD· 1 shared Murray PattersoniD· 1 shared Sarwan AliiD· 1 shared Sijia LiuiD· 1 shared Wen‐Yih Isaac TsengiD· 1 shared Yu-Hung Tung· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 10 mutual co-author links

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1 shared paperBioinformatics

Alfred O. HeroORCID

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3 papers

Recent·Most cited

BioinformaticsLecture notes in computer sciencePeer-reviewedJan 1, 2023

Unveiling the Robustness of Machine Learning Models in Classifying COVID-19 Spike Sequences

Sarwan Ali, Pin‐Yu Chen, Murray Patterson

This paper benchmarks ML models for classifying COVID-19 spike sequences, finding that deep neural networks and k-mer features outperform traditional methods in accuracy and robustness.

DOI 10.1007/978-981-99-7074-2_1

protein sequencemachine learning (classical)

𝕏 PostBluesky

NeurosciencebioRxivPreprintSep 23, 2020

Multimodal Brain Age Gap as a Mediating Indicator in the Relation between Modifiable Dementia Risk Factors and Cognitive Functioning

Chang‐Le Chen, Pin‐Yu Chen, Yu-Hung Tung…·Wen‐Yih Isaac Tseng

The paper investigates how multimodal brain age gap mediates the relationship between modifiable dementia risk factors and cognitive decline in a population-based cohort.

2 citations

humanimaging

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 20, 2018

Dynamic Network Analysis of the 4D Nucleome

Sijia Liu, Pin‐Yu Chen, Alfred O. Hero, Indika Rajapakse

The paper introduces a dynamic multilayer network approach to analyze the 4D Nucleome, showing improved predictions of form-function relationships in cellular reprogramming.

5 citations

humanHi-C

𝕏 PostBluesky