Sijia Liu

The paper investigates allele-specific relationships between gene expression and genome structure in human cells using integrated haplotype-resolved data.

The paper introduces 4DNvestigator, a toolbox for analyzing time series Hi-C and RNA-seq data, with methods to quantify network and tensor entropy and detect significant changes over time.

The paper introduces a dynamic multilayer network approach to analyze the 4D Nucleome, showing improved predictions of form-function relationships in cellular reprogramming.

This study shows that MYOD1-mediated reprogramming of human fibroblasts into muscle cells involves a genome architecture bifurcation point preceding transcriptional changes.

The paper investigates parental allele-specific genome architecture and transcription dynamics during the cell cycle in lymphoblastoid cells, identifying allele-biased expression and chromatin organization features.