Sudip Kundu

The paper simulates ancient atmospheric conditions to show how reduced CO2 and increased aridity could drive the evolution of CAM from C3 plants, with drought consistently favoring CAM regardless of CO2 levels.

The paper develops a GC-MC model to simulate metabolic and transporter activities during C3-to-CAM transition, showing increased water-use efficiency and differential enzyme activities.

The paper constructs a combined metabolic model of guard and mesophyll cells to predict metabolic fluxes and interactions in C3 and CAM plants, revealing differences in enzyme activity, osmolyte storage, and starch metabolism.

The paper identifies Codon Adaptation Index and Internal Unstructured Segments as key factors regulating co-translational mRNA decay and transcript half-life.

The paper examines how thermophilic and mesophilic proteins differ in their amino acid interactions and network structures to maintain stability at high temperatures.

The paper investigates how non-optimal codons affect mRNA stability and half-life in yeast by analyzing sequence data and integrating it with structural features.

The paper investigates whether charge-reversal mutations contribute to thermal stability in mesophilic-thermophilic/hyperthermophilic orthologous proteins by altering charge-charge interactions.

The paper identifies conserved molecular principles governing mRNA half-life regulation through structural features and evolutionary analysis.

The paper identifies native topology and cooperative stability as key factors regulating protein half-life, showing how structural features and complex interactions influence degradation rates across diverse proteins.