Author

Emanuel Schmid‐Siegert

JSR (Japan)ORCID 0000-0003-1339-5120Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Assay:long-read sequencing· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Organism:mouse· 1 Approach:statistical model· 1

Frequent Co-Authors

Ioannis XénariosiD· 3 shared Alaaddin Bulak ArpatiD· 1 shared Bonnie CheniD· 1 shared Bulak Arpat· 1 shared Huan TianiD· 1 shared Luca SantuariiD· 1 shared Marianne Bachmann SalvyiD· 1 shared Mengting Qin· 1 shared

Activity by Year

2023-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersImmunology

Ioannis XénariosORCID

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3 papers

Recent·Most cited

ImmunologymAbsPeer-reviewedOct 8, 2024

Seq2scFv: a toolkit for the comprehensive analysis of display libraries from long-read sequencing platforms

Marianne Bachmann Salvy, Luca Santuari, Emanuel Schmid‐Siegert…·Alaaddin Bulak Arpat

Seq2scFv annotates and characterizes scFv sequences from long-read sequencing data to improve antibody discovery.

3 citations

long-read sequencingdeep learning

𝕏 PostBluesky

GenomicsG3 Genes Genomes GeneticsPeer-reviewedAug 15, 2023

Reference mouse strain assemblies for BALB/c Nude and NOD/SCID mouse models

Emanuel Schmid‐Siegert, Mengting Qin, Huan Tian…·Ioannis Xénarios

The paper presents genome assemblies for NOD/SCID and BALB/c Nude mouse strains to improve understanding and usage of these immunocompromised models.

3 citations

mousewhole-genome sequencing

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BioinformaticsbioRxivPreprintMar 17, 2023

PAPET: a collection of performant algorithms to identify 5-methyl cytosine from PacBio SequelII data

Romain Groux, Ioannis Xénarios, Emanuel Schmid‐Siegert

PAPET identifies 5-methylcytosine from PacBio SequelII data using a probabilistic framework, achieving high specificity and precision comparable to PacBio's own method.

1 citation

long-read sequencingstatistical model

𝕏 PostBluesky