Author

John P Bryan

Broad InstituteORCID 0000-0003-1388-7731Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:deconvolution· 1 Research Focus:dimensionality reduction· 1 Organism:mouse· 1 Approach:optimal transport· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1

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Brian ClearyiD· 1 shared Cai McCanniD· 1 shared Loïc BinaniD· 1 shared Samouil L. FarhiiD· 1 shared Yonina C. EldariD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

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5 top collaborators · 10 mutual co-author links

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1 shared paperBioinformatics

Brian ClearyORCID

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1 paper

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJun 1, 2023

Optimization-Based Decoding of Imaging Spatial Transcriptomics Data

John P Bryan, Loïc Binan, Cai McCann…·Brian Cleary

The paper introduces JSIT, an optimization-based method for decoding imaging spatial transcriptomics data with lower magnification, improving throughput and recovery performance over standard methods.

8 citations

mousespatial transcriptomics

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