Fanny Perraudeau

CALDERA improves bacterial GWAS by testing subgraphs of De Bruijn graphs, enhancing power and interpretability while managing computational complexity.

The paper introduces a weighting strategy using a zero-inflated negative binomial model to improve bulk RNA-seq tools for single-cell RNA-seq data with zero inflation.

The paper introduces ZINB-WaVE, a method for improving low-dimensional representations of scRNA-seq data by accounting for dropouts and over-dispersion, outperforming PCA and ZIFA.

The paper presents a method to accurately estimate bacterial abundances in human metagenomes using full-length 16S sequencing reads and a generalized pair hidden Markov chain model.