Arnaud Mary

This paper introduces a de novo method to identify transposable elements and inexact repeats from RNA-seq data without a reference genome, showing effectiveness in both model and non-model species.

This study uses long-read RNA-seq to identify and quantify transposable element transcripts at the copy level in Drosophila germline tissues, revealing differences in their transcriptional landscape between testes and ovaries.

CALDERA improves bacterial GWAS by testing subgraphs of De Bruijn graphs, enhancing power and interpretability while managing computational complexity.