Author

Khaled Mohamed

University of DundeeORCID 0000-0003-1480-8695Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Assay:imaging· 2 Research Focus:benchmarking· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Dominik LindneriD· 2 shared Frances WongiD· 2 shared Jason R. SwedlowiD· 2 shared Jean‐Marie BureliD· 2 shared Josh MooreiD· 2 shared Petr WalczyskoiD· 2 shared A. YoldaşiD· 1 shared Ahmet Can SolakiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Dominik LindnerORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJul 1, 2026

IDR searcher: a search engine solution for public image resource

Khaled Mohamed, William Moore, Dominik Lindner…·Jean‐Marie Burel

The paper introduces IDR searcher, an open-source search engine for public bioimaging resources, aiming to improve dataset discovery and address disparities in accessing quality datasets.

DOI 10.1093/bioinformatics/btag486

imagingdatabase / resource

𝕏 PostBluesky

BioinformaticsHistochemistry and Cell BiologyPeer-reviewedJul 10, 2023

OME-Zarr: a cloud-optimized bioimaging file format with international community support

Josh Moore, Daniela Basurto-Lozada, Sébastien Besson…·Jason R. Swedlow

This paper describes OME-Zarr, a cloud-optimized bioimaging file format developed through community collaboration to improve scalability and data access.

129 citationstop 1%

imagingdatabase / resource

𝕏 PostBluesky