Josh Moore

The paper introduces IDR searcher, an open-source search engine for public bioimaging resources, aiming to improve dataset discovery and address disparities in accessing quality datasets.

WebAtlas integrates single cell and spatial transcriptomic data into a cloud-optimised format for interactive exploration.

SpatialData, a Zarr/OME-NGFF-based format plus Python library, unifies images, labels, points, shapes and tables across spatial omics platforms with coordinate alignment, lazy loading and cross-modal aggregation.

This study creates a prenatal human skin cell atlas, revealing immune cells' role in skin development and showing their impact on vascular and hair follicle formation.

This paper describes OME-Zarr, a cloud-optimized bioimaging file format developed through community collaboration to improve scalability and data access.

MoBIE is a Fiji plugin that enables visualization, sharing, and management of large, multi-modal image data across platforms.

The paper introduces next-generation file formats (NGFF) to improve the FAIRness of bioimaging data by addressing limitations of translation and conversion approaches.

This paper presents standardization efforts for cell migration data to improve data sharing and analysis.

The paper introduces IDR, a platform for integrating and disseminating biological image data, enabling analysis of gene networks and functional interactions through linked data and computational resources.

The paper introduces OME Files, an open-source reference library for the OME-XML metadata model and OME-TIFF file format to standardize biological imaging data.