Author

Muhammad Asim Javed

Université LavalORCID 0000-0003-1658-3565Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Genomics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Organism:plant (other)· 3 Assay:whole-genome sequencing· 3 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Research Focus:clustering· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Edel Pérez‐LópeziD· 4 shared Soham MukhopadhyayiD· 4 shared Jiaxu WuiD· 3 shared Anne‐Sophie BrochuiD· 2 shared Elisa Ines FantinoiD· 2 shared Andrea FickeiD· 1 shared Andres MäeiD· 1 shared Anh Tung Phan Lam· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersMicrobiology

Edel Pérez‐LópezORCID

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4 papers

Recent·Most cited

GenomicsbioRxivPreprintOct 20, 2026

Global population genomics and pangenome of the clubroot pathogen link clonal expansion and effector diversification to resistance breakdown in canola

Muhammad Asim Javed, Florent Sylvestre, Sandra M. Velasco‐Cuervo…·Edel Pérez‐López

DOI 10.64898/2026.10.14.759018

whole-genome sequencingstatistical model

𝕏 PostBluesky

Plant BiologybioRxivPreprintJul 23, 2026

RenSeq and whole genome sequencing uncover allelic diversity of clubroot resistance genes in commercial breeding canola lines

Jiaxu Wu, Soham Mukhopadhyay, Muhammad Asim Javed…·Edel Pérez‐López

The paper uses whole-genome sequencing and RenSeq to analyze NLR gene diversity in clubroot-resistant canola lines and identifies allele-level variation contributing to resistance.

DOI 10.64898/2026.07.22.740042

plant (other)whole-genome sequencing

𝕏 PostBluesky

MicrobiologyeLifePeer-reviewedOct 7, 2025

Structure-guided secretome analysis of gall-forming microbes offers insights into effector diversity and evolution

Soham Mukhopadhyay, Muhammad Asim Javed, Jiaxu Wu, Edel Pérez‐López

The paper uses structural genomics to analyze secretomes of gall-forming microbes, identifying novel effector clusters and their potential roles in pathogenicity.

10 citations

plant (other)proteomics

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MicrobiologyGenome Biology and EvolutionPeer-reviewedJun 1, 2024

Telomere-to-telomere genome assembly of the clubroot pathogen Plasmodiophora brassicae

Muhammad Asim Javed, Soham Mukhopadhyay, Éric Normandeau…·Edel Pérez‐López

This paper presents the first telomere-to-telomere genome assembly of Plasmodiophora brassicae, a plant pathogen, and provides a high-quality gene annotation.

21 citationstop 5%

plant (other)whole-genome sequencing

𝕏 PostBluesky