Nicholas Noll

This study investigates how ecological interactions influence the growth of antibiotic-resistant E. coli strains in human gut microbiomes, finding that strain-specific factors and competitive interactions drive their success.

PanGraph constructs a scalable pan-genome graph from whole-genome assemblies to capture structural and nucleotide polymorphisms across bacterial populations.

The paper uses single molecule sequencing to analyze genomic diversity of carbapenemase-producing bacteria and identifies patterns of carbapenemase movement and recombination.