Author

Emanuele Marchi

University of OxfordORCID 0000-0003-1741-9353Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genetic & Genomic Medicine· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Approach:statistical model· 3 Research Focus:cell-cell communication· 2 Research Focus:gene regulatory network inference· 2 Approach:benchmark study· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Aris KatzourakisiD· 2 shared Audrey T. LiniD· 2 shared Cindy G. SantanderiD· 2 shared Gkikas MagiorkinisiD· 2 shared Paul KlenermaniD· 2 shared Timokratis KaramitrosiD· 2 shared Alexandra J Corbett· 1 shared Ayako Kurioka· 1 shared

Activity by Year

2018-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersBioinformatics

Aris KatzourakisORCID

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4 papers

Recent·Most cited

Genetic & Genomic MedicinemedRxivPreprintOct 12, 2025

Genome-wide association and gene-virus interaction study of liver disease in hepatitis C virus-infected patients

Jocelyn Quistrebert, Haiting Chai, Yan Chen…·M. Azim Ansari

This study identifies genetic risk factors and host-viral interactions for cirrhosis progression in hepatitis C virus-infected patients but finds no genome-wide significant associations for hepatocellular carcinoma.

DOI 10.1101/2025.10.12.25337816

humanwhole-exome sequencing

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ImmunologybioRxivPreprintDec 9, 2018

Activation and in vivo evolution of the MAIT cell transcriptome in mice and humans reveals diverse functionality

Timothy SC Hinks, Emanuele Marchi, Maisha Jabeen…·James McCluskey

The paper defines the transcriptome of activated MAIT cells in mice and humans and shows how it changes during infection phases, revealing a tissue repair phenotype.

DOI 10.1101/490649

humanmouse

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BioinformaticsbioRxivPreprintOct 28, 2018

Targeting endogenous retrovirus gene transcription in human cancers

Audrey T. Lin, Cindy G. Santander, Emanuele Marchi…·Gkikas Magiorkinis

This study develops a novel pipeline to measure low-level transcription of HERV-K (HML-2) np9 and rec genes in cancer and embryos, finding their overexpression in multiple cancers and specific embryonic stages.

1 citation

humanbulk RNA-seq

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BioinformaticsbioRxivPreprintOct 25, 2018

HERV-K HML-2 transcription in diverse cancers is related with cancer stem cell and epithelial-mesenchymal transition markers

Audrey T. Lin, Cindy G. Santander, Fabrícia Ferreira do Nascimento…·Gkikas Magiorkinis

The paper identifies HERV-K (HML-2) genes np9 and rec as correlated with cancer stem cell and EMT biomarkers, suggesting their role in cancer malignancy and cell state transitions.

1 citation

humanbulk RNA-seq

𝕏 PostBluesky