Author

Audrey T. Lin

University of OxfordORCID 0000-0003-2505-1480Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Organism:human· 2 Research Focus:cell-cell communication· 1 Research Focus:gene regulatory network inference· 1 Research Focus:phylogenetics / evolution· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Aris KatzourakisiD· 2 shared Cindy G. SantanderiD· 2 shared Emanuele MarchiiD· 2 shared Gkikas MagiorkinisiD· 2 shared Timokratis KaramitrosiD· 2 shared Alexander G. LucaciiD· 1 shared Angela R. PerriiD· 1 shared Ayusman DashiD· 1 shared

Activity by Year

2018-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersBioinformatics

Aris KatzourakisORCID

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3 papers

Recent·Most cited

Evolutionary BiologyCell GenomicsPeer-reviewedJul 27, 2026

On the ancestry and evolution of the extinct dire wolf

Gregory L. Gedman, Kathleen M. Morrill, Jonas Oppenheimer…·Beth Shapiro

This study uses paleogenomes of dire wolves to resolve their evolutionary relationships and identify genes under diversifying selection.

7 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintOct 28, 2018

Targeting endogenous retrovirus gene transcription in human cancers

Audrey T. Lin, Cindy G. Santander, Emanuele Marchi…·Gkikas Magiorkinis

This study develops a novel pipeline to measure low-level transcription of HERV-K (HML-2) np9 and rec genes in cancer and embryos, finding their overexpression in multiple cancers and specific embryonic stages.

1 citation

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintOct 25, 2018

HERV-K HML-2 transcription in diverse cancers is related with cancer stem cell and epithelial-mesenchymal transition markers

Audrey T. Lin, Cindy G. Santander, Fabrícia Ferreira do Nascimento…·Gkikas Magiorkinis

The paper identifies HERV-K (HML-2) genes np9 and rec as correlated with cancer stem cell and EMT biomarkers, suggesting their role in cancer malignancy and cell state transitions.

1 citation

humanbulk RNA-seq

𝕏 PostBluesky