Author

Melike Berksöz

Sabancı ÜniversitesiORCID 0000-0003-1774-2193Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:protein folding & dynamics· 2 Assay:protein structure· 2 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:mechanistic / dynamical model· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Canan AtılganiD· 2 shared Ali Rana AtılganiD· 1 shared Burak KocukiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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2 shared papersBiophysics

Canan AtılganORCID

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2 papers

Recent·Most cited

BiophysicsJournal of Molecular BiologyPeer-reviewedMay 28, 2025

Multiply Perturbed Response to Disclose Allosteric Control of Conformational Change: Application to Fluorescent Biosensor Design

Melike Berksöz, Ali Rana Atılgan, Burak Kocuk, Canan Atılgan

The paper introduces a method to identify key residues driving conformational changes in proteins using multiple perturbations, with applications in biosensor design.

4 citations

protein structuredeep learning

𝕏 PostBluesky

BiophysicsJournal of Chemical Information and ModelingPeer-reviewedDec 27, 2024

Ranking Single Fluorescent Protein Based Calcium Biosensor Performance by Molecular Dynamics Simulations

Melike Berksöz, Canan Atılgan

The paper uses molecular dynamics simulations to evaluate and rank the performance of single fluorescent protein-based calcium biosensors based on water distribution and hydrogen bond changes.

3 citations

protein structuremechanistic / dynamical model

𝕏 PostBluesky