Author

Carlos S. Casimiro‐Soriguer

Fundación Progreso y SaludORCID 0000-0003-1774-2580Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Microbiology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Organism:bacteria (other)· 2 Approach:experimental assay· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Joaquı́n DopazoiD· 5 shared Javier Pérez-FloridoiD· 3 shared Carlos LouceraiD· 2 shared Féderico GarcíaiD· 2 shared J. Alberto Chaves· 2 shared José Antonio LepeiD· 2 shared Manuel A. Rodríguez-IglesiasiD· 2 shared María Lara· 2 shared

Activity by Year

2019-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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5 shared papersMicrobiology

Joaquı́n DopazoORCID

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5 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 19, 2026

Scaling Functional Annotation Across Proteomes, Pangenomes and Metagenomes with Sma3s v3

Alejandro Rubio, Jesús L García-Junco Alcalá, Elisa Luque-Jiménez…·Carlos S. Casimiro‐Soriguer

Sma3s v3 improves functional annotation of proteomes, pangenomes, and metagenomes by scaling annotation workflows and outperforming existing tools.

DOI 10.64898/2026.09.14.748778

bacteria (other)proteomics

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MicrobiologyMicrobiology SpectrumPeer-reviewedAug 20, 2024

Genotypic Characterization and Antimicrobial Susceptibility of Human Campylobacter jejuni Isolates in Southern Spain

Pablo Fernández-Palacios, Fátima Galán‐Sánchez, Carlos S. Casimiro‐Soriguer…·Manuel A. Rodríguez-Iglesias

This study analyzes the genotypic characteristics, antimicrobial resistance, and virulence factors of 114 Campylobacter jejuni isolates from southern Spain, revealing high resistance to ciprofloxacin and tetracycline.

7 citations

humanwhole-genome sequencing

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MicrobiologyScientific ReportsPeer-reviewedAug 19, 2024

SIEGA the integrated genomic surveillance system of Andalusia, a One Health regional resource connected with the clinic

Carlos S. Casimiro‐Soriguer, Javier Pérez-Florido, Enrique A. Robles…·Joaquín Dopazo

SIEGA is a genomic surveillance system that integrates data from humans, animals, and the environment to monitor infectious diseases and antimicrobial resistance.

8 citations

bacteria (other)whole-genome sequencing

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GenomicsbioRxivPreprintApr 13, 2021

From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance

Francisco Manuel Ortuño, Carlos Loucera, Carlos S. Casimiro‐Soriguer…·Joaquı́n Dopazo

The paper develops impuSARS, a method to impute missing SARS-CoV-2 genome sequences, improving the utility of incomplete data for epidemiological surveillance.

3 citations

whole-genome sequencingstatistical model

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GenomicsBiology DirectPeer-reviewedAug 20, 2019

Antibiotic resistance and metabolic profiles as functional biomarkers that accurately predict the geographic origin of city metagenomics samples

Carlos S. Casimiro‐Soriguer, Carlos Loucera, Javier Pérez-Florido…·Joaquı́n Dopazo

26 citations

metagenomicsmachine learning (classical)

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