Author

Rachid Ounit

University of California, RiversideORCID 0000-0003-1803-261XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:database / resource· 1 Organism:plant (other)· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Stefano LonardiiD· 3 shared Abid Hasan· 1 shared Alan Howard SchulmaniD· 1 shared Alexa B. R. McIntyreiD· 1 shared Andrew D FarmeriD· 1 shared Arsenio Daniel NdeveiD· 1 shared Christopher E. MasoniD· 1 shared David DankoiD· 1 shared

Activity by Year

2016-2019 · peak 1/yr

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10 top collaborators · 25 mutual co-author links

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3 shared papersGenomics

Stefano LonardiORCID

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3 papers

Recent·Most cited

GenomicsThe Plant JournalPeer-reviewedApr 24, 2019

The genome of cowpea (Vigna unguiculata Walp.)

Stefano Lonardi, María Muñoz‐Amatriaín, Qihua Liang…·Timothy J. Close

This study presents a high-quality genome assembly of cowpea, identifies genomic features, and discovers a chromosomal inversion linked to Striga resistance.

374 citationstop 1%

plant (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsGenome biologyPeer-reviewedSep 21, 2017

Comprehensive Benchmarking and Ensemble Approaches for Metagenomic Classifiers

Alexa B. R. McIntyre, Rachid Ounit, Ebrahim Afshinnekoo…·Christopher E. Mason

This study benchmarks eleven metagenomic classifiers using 846 species and evaluates strategies to reduce false positives in taxonomic classification.

342 citationstop 1%

metagenomicsbenchmark study

𝕏 PostBluesky

BioinformaticsbioRxivAug 13, 2016

Higher classification sensitivity of short metagenomic reads with CLARK-S

Rachid Ounit, Stefano Lonardi

CLARK-S improves taxonomic classification of short metagenomic reads by enhancing sensitivity without sacrificing precision or speed.

DOI 10.1093/bioinformatics/btw542

metagenomicsstatistical model

𝕏 PostBluesky