Agnieszka Danek

AGC provides a compact representation of assembled genomes, reducing storage space by 2-3 orders of magnitude while enabling efficient extraction of contig parts.

VCFShark compresses VCF files more efficiently than standard methods, reducing their size by up to an order of magnitude.

GTShark compresses large genotype datasets and single samples to achieve previously unattainable file sizes.

Kmer-db estimates evolutionary distances between pathogens using k-mers, achieving 44x faster performance than Mash on a modern workstation.

GTC is a compressed data structure for genetic variation data that improves compression ratio and query speed compared to existing solutions.