Author

Maciej Długosz

Silesian University of TechnologyORCID 0000-0001-5986-4979Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:dimensionality reduction· 1 Research Focus:variant calling· 1 Organism:zebrafish· 1

Frequent Co-Authors

Marek KokotiD· 3 shared Sebastian DeorowicziD· 3 shared Matteo A. PellegriniiD· 2 shared Adam GudyśiD· 1 shared Agnieszka DanekiD· 1 shared Emma K. CostaiD· 1 shared Giorgia Del VecchioiD· 1 shared Jingxun CheniD· 1 shared

Activity by Year

2018-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersBioinformatics

Marek KokotORCID

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3 papers

Recent·Most cited

Alignment-Free k-mer Analysis Reveals Age-Associated k-mer Signals in Canine Buccal DNA and Cell-Free DNA

Sonya Hu, Giorgia Del Vecchio, Maciej Długosz, Marek Kokot, Sebastian Deorowicz, Matteo A. Pellegrini

This study identifies age-associated k-mer signals in canine buccal and cell-free DNA using alignment-free k-mer analysis and ridge regression models.

bioRxiv · Oct 30, 2026 · PreprintBioinformatics

MKMC enables reference-free transcriptomic analysis using k-mer representations

Lajoyce Mboning, Maciej Długosz, Marek Kokot, Jingxun Chen, Emma K. Costa, Man-Ru Wu, Sui Wang, Louis‐S. Bouchard, Sebastian Deorowicz, Matteo A. Pellegrini

MKMC enables reference-free transcriptomic analysis using k-mer representations, detecting isoform-specific events and matching alignment-based methods in differential expression and age prediction.

bioRxiv · Jul 10, 2026 · PreprintBioinformatics

Kmer-db: instant evolutionary distance estimation

Sebastian Deorowicz, Adam Gudyś, Maciej Długosz, Marek Kokot, Agnieszka Danek

Kmer-db estimates evolutionary distances between pathogens using k-mers, achieving 44x faster performance than Mash on a modern workstation.

Bioinformatics · Jul 7, 2018Peer-reviewedBioinformatics