Samuel Pastva

TabularQual provides a spreadsheet-based format for annotating logical models, with tools to convert between spreadsheets and SBML-qual, enhancing model reuse and interoperability.

This paper introduces biobalm, a tool for constructing succession diagrams of Boolean networks, showing improved performance and demonstrating that non-random models have complex attractor landscapes.

The paper introduces a dataset of 210+ Boolean network models with validation to ensure logical consistency and integrity.