Author

Rui Li

Eli Lilly (United States)ORCID 0000-0003-2419-4463Unclaimed ORCID profile · follow to get notified of new preprints

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Rui Li19 papers · University of Massachusetts Chan Medical School

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alexandre DupreyiD· 2 shared Rui WuiD· 2 shared Alan ShiiD· 1 shared Jiajie Shi· 1 shared Shuang CaoiD· 1 shared Ting Chen· 1 shared Yushi LiuiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 17 mutual co-author links

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2 shared papersBioinformatics

Alexandre DupreyORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 3, 2026

Dynamic Consistency Reveals Predictable Genes in Cross-Cell Type Temporal scRNA-Seq Data

Jiajie Shi, Rui Wu, Rui Li, Alexandre Duprey

The paper introduces Dynamic Consistency Index (DCI) to identify predictable genes across cell types in temporal scRNA-seq data and shows it improves modeling accuracy with uncertainty-aware recurrent networks.

2 citations

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJun 9, 2025

CSLAN: Cross-Species Latent Alignment Network for Trauma-Related Cell-Type Classification

Rui Wu, Alan Shi, Yushi Liu…·Shuang Cao

CSLAN transfers mouse cell type knowledge to human trauma-related scRNA-seq data, achieving 96.67% accuracy in immune cell classification.

4 citations

𝕏 PostBluesky