Author

Alan Shi

RMIT UniversityORCID 0009-0008-6939-039XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Organism:human· 1 Organism:mouse· 1 Organism:rat· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Abdullah Al Mamun SohagiD· 1 shared Alexandre DupreyiD· 1 shared Andjela Micic· 1 shared Bobbi FleissiD· 1 shared David R. NisbetiD· 1 shared David W. WalkeriD· 1 shared Emily Ross-MunroiD· 1 shared Flora Y. WongiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperDevelopmental Biology

Abdullah Al Mamun SohagORCID

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2 papers

Recent·Most cited

Developmental BiologyBrain CommunicationsPeer-reviewedJan 1, 2026

A Minimally Invasive, Scalable and Reproducible Neonatal Rat Model of Severe Focal Brain Injury

Victor Mondal, Emily Ross-Munro, Gayathri K. Balasuriya…·Bobbi Fleiss

This paper introduces a new neonatal rat model of focal brain injury that is minimally invasive, scalable, and reproducible, showing consistent lesion volumes and functional outcomes.

1 citation

ratstatistical model

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BioinformaticsbioRxivPreprintJun 9, 2025

CSLAN: Cross-Species Latent Alignment Network for Trauma-Related Cell-Type Classification

Rui Wu, Alan Shi, Yushi Liu…·Shuang Cao

CSLAN transfers mouse cell type knowledge to human trauma-related scRNA-seq data, achieving 96.67% accuracy in immune cell classification.

4 citations

mousehuman

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