Author

Rory M. Welsh

Centers for Disease Control and PreventionORCID 0000-0003-2448-0128Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:fungi (other)· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1

Frequent Co-Authors

Anastasia P. LitvintsevaiD· 3 shared Christina A. CuomoiD· 2 shared José Fernando MuñoziD· 2 shared Lalitha GadeiD· 2 shared Nancy A. ChowiD· 2 shared Aleksandr O. Morgulis· 1 shared Alexandre AlanioiD· 1 shared Amrita BharatiD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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3 shared papersGenomics

Anastasia P. LitvintsevaORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 30, 2023

Finding Candida auris in public metagenomic repositories

Jorge E. Mario-Vasquez, Ujwal R. Bagal, Elijah Kariem Lowe…·Nancy A. Chow

The paper identifies Candida auris sequences in public metagenomic datasets using a new pipeline and volunteer computing.

DOI 10.1101/2023.08.30.555569

metagenomicsstatistical model

𝕏 PostBluesky

GenomicsGeneticsPeer-reviewedFeb 24, 2021

Chromosomal rearrangements and loss of subtelomeric adhesins linked to clade-specific phenotypes in Candida auris

José Fernando Muñoz, Rory M. Welsh, Terrance Shea…·Christina A. Cuomo

The paper identifies chromosomal rearrangements and loss of subtelomeric adhesins in Clade II of Candida auris, linking these to reduced virulence and outbreak potential compared to other clades.

125 citationstop 3%

fungi (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsmBioPeer-reviewedApr 27, 2020

Tracing the evolutionary history and global expansion of Candida auris using population genomic analyses

Nancy A. Chow, José Fernando Muñoz, Lalitha Gade…·Christina A. Cuomo

This study traces the global emergence and evolutionary history of Candida auris using population genomic analyses of isolates from 19 countries, identifying clades, phylogeographic patterns, and antifungal resistance mechanisms.

463 citationstop 2%

fungi (other)whole-genome sequencing

𝕏 PostBluesky