Author

Stephanie H. Hoyt

Boyce Thompson InstituteORCID 0000-0003-2570-6838Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Assay:ATAC-seq· 1 Approach:Bayesian inference· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Alan NeimaniD· 1 shared Amanda Thate· 1 shared Andrea LuiD· 1 shared Andrew D. CherniackiD· 1 shared Andrew S. AlleniD· 1 shared Angela R.S. KruseiD· 1 shared Anuja Mathew· 1 shared Bailey Kennedy· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Alan NeimanORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintOct 2, 2026

TangentXY: Improved copy-number estimation of sex chromosomes reveals features associated with aneuploidies in chromosomes X and Y across cancers

Kei Enomoto, Shahab Sarmashghi, Sean A. Misek…·Rameen Beroukhim

TangentXY improves copy-number estimation for sex chromosomes, revealing associations between chrX and chrY copy-number alterations and cancer features.

DOI 10.64898/2026.10.01.755972

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMar 31, 2026

Identifying Inheritance Patterns of Allelic Imbalance, using Integrative Modeling and Bayesian Inference

Stephanie H. Hoyt, Timothy E. Reddy, Raluca Gordân…·William H. Majoros

The paper develops a Bayesian method to infer inheritance patterns of allelic imbalance across trios, improving ASE estimation and linking it to chromatin state and causal variants.

DOI 10.64898/2026.03.28.714974

humanATAC-seq

𝕏 PostBluesky

GenomicsGigaSciencePeer-reviewedJan 1, 2024

Diaci v3.0: Chromosome-level assembly, de novo transcriptome and manual annotation of Diaphorina citri, insect vector of Huanglongbing

Teresa D. Shippy, Prashant S. Hosmani, Mirella Flores-Gonzalez…·Surya Saha

The paper presents a chromosome-level genome assembly and manual annotation of Diaphorina citri, along with transcriptome and endosymbiont genomes, providing genomic resources for pest control research.

29 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky