Author

Dari Shalon

Instacart (United States)ORCID 0000-0003-2646-6215Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Assay:metagenomics· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Kerwyn Casey HuangiD· 2 shared Ankit SinhaiD· 1 shared Arvie VioletteiD· 1 shared Ceena NafarzadeganiD· 1 shared Christophe JunotiD· 1 shared Edwin H. Rodriguez· 1 shared Evelyn Giselle Lemus SilvaiD· 1 shared Florian A. RosenbergeriD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersBioinformatics

Kerwyn Casey HuangORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 11, 2026

FastaLake selects compact metaproteomic databases from large sequence reservoirs by de novo peptide lookup

Peter V. Treit, Florian A. Rosenberger, Philip Hartout…·Matthias Mann

FastaLake constructs compact metaproteomic databases from sequence resources to improve peptide identification without requiring matched metagenomic sequencing.

DOI 10.64898/2026.10.08.757395

humanmetagenomics

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MicrobiologybioRxivPreprintApr 24, 2024

Improved mouse models of the small intestine microbiota using region-specific sampling from humans

Rebecca Neal Culver, Sean Paul Spencer, Arvie Violette…·Kerwyn Casey Huang

The paper develops improved mouse models of the small intestine microbiota using region-specific human intestinal sampling and in vitro culturing, showing increased diversity and reproducibility in colonization.

3 citations

humanmouse

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