Author

Lily Zheng

Johns Hopkins UniversityORCID 0000-0003-2722-3522Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:whole-exome sequencing· 2 Approach:Bayesian inference· 1 Research Focus:clustering· 1 Approach:experimental assay· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Rachel KarchiniD· 2 shared Ben BusbyiD· 1 shared Collin J. TokheimiD· 1 shared Kyle Moad· 1 shared Kymberleigh A. PageliD· 1 shared Laura DeLong WoodiD· 1 shared Matt Hynes-Grace· 1 shared Michaël RyaniD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Rachel KarchinORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJun 1, 2022

Estimation of cancer cell fractions and clone trees from multi-region sequencing of tumors

Lily Zheng, Noushin Niknafs, Laura DeLong Wood…·Robert B. Scharpf

This paper introduces PICTograph, a Bayesian model for estimating cancer cell fractions and clone trees from multi-region sequencing data, showing improved accuracy in subclone reconstruction and evolutionary inference.

13 citations

humanwhole-exome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintOct 6, 2019

OpenCRAVAT, an open source collaborative platform for the annotation of human genetic variation

Kymberleigh A. Pagel, Rick Kim, Kyle Moad…·Rachel Karchin

OpenCRAVAT provides an open-source platform for variant and gene prioritization by integrating diverse data resources and computational methods.

7 citations

humanwhole-exome sequencing

𝕏 PostBluesky