Author

Tyler Kolisnik

Canada's Michael Smith Genome Sciences CentreORCID 0000-0003-2740-4219Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1

Frequent Co-Authors

Rachel Violet PurcelliD· 2 shared Adam N. H. SmithiD· 1 shared Arielle Kae SulitiD· 1 shared Faeze Keshavarz-RahaghiiD· 1 shared Frank FrizelleiD· 1 shared Olin SilanderiD· 1 shared Sebastian SchmeieriD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 12 mutual co-author links

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2 shared papersBioinformatics

Rachel Violet PurcellORCID

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2 papers

Recent·Most cited

BioinformaticsBriefings in Functional GenomicsPeer-reviewedSep 24, 2024

pyRforest: A comprehensive R package for genomic data analysis featuring scikit-learn Random Forests in R

Tyler Kolisnik, Faeze Keshavarz-Rahaghi, Rachel Violet Purcell…·Olin Silander

pyRforest integrates Python's Random Forest algorithms into R for efficient genomic data classification and analysis, offering improved interpretability and additional statistical methods.

9 citations

bulk RNA-seqmachine learning (classical)

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BioinformaticsGut MicrobiomePeer-reviewedJan 1, 2023

MetaFunc: Taxonomic and Functional Analyses of High Throughput Sequencing for Microbiomes

Arielle Kae Sulit, Tyler Kolisnik, Frank Frizelle…·Sebastian Schmeier

MetaFunc performs taxonomic and functional analysis of microbiome sequencing data, linking species to gene functions and enabling host gene analysis and differential abundance studies.

9 citations

humanmetagenomics

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