Author

Varun Jain

Illumina (United States)ORCID 0000-0003-2957-6890Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:experimental assay· 1 Assay:long-read sequencing· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Rami MehioiD· 2 shared Severine CatreuxiD· 2 shared Adrián Muñoz‐BarreraiD· 1 shared Alexey Dolgoborodov· 1 shared Alexey KolesnikoviD· 1 shared Amit JainiD· 1 shared Andigoni MalousiiD· 1 shared Andrew W. CarrolliD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Rami MehioORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 23, 2023

Somatic small-variant calling methods in Illumina DRAGEN™ Secondary Analysis

Konrad Scheffler, Severine Catreux, Taylor O’Connell…·Rami Mehio

The paper introduces DRAGEN's somatic variant calling pipeline, demonstrating its speed and accuracy in whole-genome sequencing tumor-normal analysis compared to existing tools.

16 citations

whole-genome sequencingexperimental assay

𝕏 PostBluesky

BioinformaticsCell GenomicsPeer-reviewedApr 27, 2022

precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

Nathan D. Olson, Justin Wagner, Jennifer McDaniel…·Justin M. Zook

The paper evaluates variant calling in difficult genomic regions using short- and long-read sequencing, showing improved performance with new methods and multi-technology approaches.

202 citationstop 1%

whole-genome sequencinglong-read sequencing

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