Author

Kyle J. Bibby

University of Notre DameORCID 0000-0003-3142-6090Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:host-pathogen & immune response· 1 Assay:metagenomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Andrei Badilla-AguilariD· 1 shared Arthur WickenhageniD· 1 shared Dylan H. MorrisiD· 1 shared Elyse Stachler· 1 shared Emma M. Thrift-CahalliD· 1 shared Emmie de WitiD· 1 shared Franziska Karola KaiseriD· 1 shared James O. Lloyd‐SmithiD· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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1 shared paperEcology

Andrei Badilla-AguilarORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Drainage water management reduces nutrient, Escherichia coli, and antibiotic resistance gene export

Emma M. Thrift-Cahall, Jennifer L. Tank, Ursula H. Mahl, Mitchell J. Liddick, Andrei Badilla-Aguilar, Kyle J. Bibby

This study evaluates drainage water management's impact on nutrient, E. coli, and antibiotic resistance gene export, finding reduced nutrient and microbial transport but variable effects on antibiotic resistance genes.

bioRxiv · Oct 2, 2026 · PreprintEcology

Environmental stability of HPAIV H5N1 in raw milk, wastewater and on surfaces

Franziska Karola Kaiser, Santiago Cardenas, Kwe Claude Yinda, Reshma Koolaparambil Mukesh, Missiani Ochwoto, Shane Gallogly, Arthur Wickenhagen, Kyle J. Bibby, Emmie de Wit, Dylan H. Morris, James O. Lloyd‐Smith, Vincent Jacobus Munster

The paper assesses the environmental stability of H5N1 influenza virus in raw milk, wastewater, and on surfaces, finding slow decay in milk suggests transmission risks.

Emerging infectious diseases · Mar 18, 2025Peer-reviewedMicrobiology

Evaluation of Oxford Nanopore MinION Sequencing for 16S rRNA Microbiome Characterization

Xiao Ma, Elyse Stachler, Kyle Bibby

This paper evaluates Oxford Nanopore MinION sequencing for 16S rRNA microbiome analysis, finding high taxonomic similarity with Illumina but challenges in rare taxa detection and carryover issues.

bioRxiv · Jan 29, 2017 · PreprintMicrobiology