Author

Alexis Coullomb

Centre National de la Recherche ScientifiqueORCID 0000-0003-3164-6640Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:deconvolution· 1

Frequent Co-Authors

Véra PancaldiiD· 3 shared Abdelmounim EssabbariD· 1 shared Alexis HucteauiD· 1 shared Bram Van HaastrechtiD· 1 shared Colas Foulon· 1 shared Francisco Cruzalegui· 1 shared Jacobo SolórzanoiD· 1 shared Julien Pernet· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersBioinformatics

Véra PancaldiORCID

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3 papers

Recent·Most cited

BioinformaticsMolecular & Cellular ProteomicsPeer-reviewedFeb 26, 2026

mosna reveals different types of cellular interactions predictive of response to immunotherapies and survival in cancer

Alexis Coullomb, Colas Foulon, Bram Van Haastrecht…·Véra Pancaldi

mosna analyzes spatial omics data to identify cell interactions predictive of immunotherapy response and survival in cancer.

7 citationstop 2%

humanspatial transcriptomics

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedJun 30, 2021

Tysserand - Fast and accurate reconstruction of spatial networks from bioimages

Alexis Coullomb, Véra Pancaldi

The paper introduces tysserand, a Python library for reconstructing spatial networks from spatially resolved omics data, with tools for method integration, parameter selection, and network cleaning.

7 citations

spatial transcriptomicsexperimental assay

𝕏 PostBluesky

BioinformaticsbioRxivPreprintApr 9, 2021

GEM-DeCan: Improved tumor immune microenvironment profiling through novel gene expression and DNA methylation signatures predicts immunotherapy response

Ting Xie, Jacobo Solórzano, Miguel Madrid-Mencía…·Véra Pancaldi

The paper introduces new gene expression and DNA methylation signatures for tumor immune microenvironment profiling, showing improved performance in predicting immunotherapy response.

2 citations

humanbulk RNA-seq

𝕏 PostBluesky