Author

Samuel Kariuki

Kenya Medical Research InstituteORCID 0000-0003-3209-9503Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Assay:metagenomics· 1

Frequent Co-Authors

Abdoulie KantehiD· 1 shared Abdul Khalie Muhammad· 1 shared Abubakar Shaaban HozaiD· 1 shared Adrián CazaresiD· 1 shared Alexanda MzulaiD· 1 shared Alyce Taylor–BrowniD· 1 shared Archibald Kwame WorwuiiD· 1 shared Balvinder MohaniD· 1 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Abdoulie KantehORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MicrobiologybioRxivPreprintOct 26, 2025

One Health assessment of antimicrobial-resistant Enterobacterales and ESKAPE pathogens in little stints (Calidris minuta) and aquatic ecosystems of the Kenyan Rift Valley

CATHERINE WANGUI MBUTHIA, Rael J. Too, Alexanda Mzula…·Abubakar Shaaban Hoza

This study assesses antimicrobial resistance in little stints and their aquatic ecosystems in Kenya, finding widespread resistance despite no significant differences between high and low impact sites.

DOI 10.1101/2025.10.26.684674

metagenomicsexperimental assay

𝕏 PostBluesky

GenomicsbioRxivPreprintMay 22, 2025

Aeromonas: Genomic Insights into an Environmental Pathogen and Reservoir of Antimicrobial Resistance

Nisha Singh, Rahma O. Golicha, Chetan Thakur…·Nicholas Robert Thomson

This study analyzes 1,853 Aeromonas genomes, revealing high genetic diversity, widespread AMR genes, and frequent misidentification as Vibrio cholerae.

DOI 10.1101/2025.05.22.655522

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsMicrobial GenomicsPeer-reviewedMar 1, 2022

Genomic diversity and antimicrobial resistance among non-typhoidal Salmonella associated with human disease in The Gambia

Saffiatou Darboe, Richard Stewart Bradbury, Jody Emile Phelan…·Martín Antonio

The paper characterizes genomic diversity and antimicrobial resistance in non-typhoidal Salmonella from The Gambia, identifying multidrug-resistant strains and their epidemiological implications.

16 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky