Author

Jules Beekwilder

Wageningen University & ResearchORCID 0000-0003-3238-4427Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Jules Beekwilder1 paper

Biology Disciplines

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Bioinformatics· 2 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 2 Assay:protein sequence· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Aalt D. J. van DijkiD· 2 shared Dick de RidderiD· 2 shared Harro J. BouwmeesteriD· 2 shared Janani DurairajiD· 2 shared Alice Di GirolamoiD· 1 shared Antoine RaynaliD· 1 shared Christos BatianisiD· 1 shared Elena Melillo· 1 shared

Activity by Year

2018-2026 · peak 1/yr

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10 top collaborators · 20 mutual co-author links

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2 shared papersBioinformatics

Aalt D. J. van DijkORCID

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3 papers

Recent·Most cited

Synthetic BiologyACS Synthetic BiologyPeer-reviewedMar 15, 2026

Rhodo-Box: a Synthetic Biology Toolbox to Facilitate Metabolic Engineering of Rhodobacter sphaeroides

Matic Kostanjšek, Antoine Raynal, George Dimopoulos…·Markus M.M. Bisschops

The paper introduces Rhodo-Box, a toolkit for R. sphaeroides that provides standardized genetic parts and cloning workflows to enhance metabolic engineering.

3 citationstop 5%

bacteria (other)experimental assay

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BioinformaticsPLoS Computational BiologyPeer-reviewedMar 22, 2021

Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases

Janani Durairaj, Elena Melillo, Harro J. Bouwmeester…·Aalt D. J. van Dijk

The paper predicts precursor cation specificity in plant sesquiterpene synthases using machine learning and co-evolution analysis, identifying key residues for enzyme function.

34 citations

plant (other)protein sequence

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BioinformaticsPhytochemistryPeer-reviewedNov 13, 2018

An Analysis of Characterized Plant Sesquiterpene Synthases

Janani Durairaj, Alice Di Girolamo, Harro J. Bouwmeester…·Aalt D. J. van Dijk

The paper analyzes plant sesquiterpene synthases to identify motifs and unexplored sequence regions, and demonstrates a database application for guiding mutagenesis studies on product specificity.

79 citations

plant (other)protein sequence

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