Author

Afeefa Zainab

Kyoto UniversityORCID 0000-0003-3357-8661Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Organism:human· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Alexis VandenboniD· 2 shared Vladyslav HoncharukiD· 2 shared Diego DíeziD· 1 shared Keiko Takemoto· 1 shared Shinpei KawaokaiD· 1 shared Yoshiya HorimotoiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Alexis VandenbonORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 15, 2025

oCELLoc: Automated Cell Type Assignment in Transcriptomics Data Using Reference Filtering

Afeefa Zainab, Vladyslav Honcharuk, Alexis Vandenbon

oCELLoc improves cell-type prediction in scRNA-seq and spatial transcriptomics data by filtering relevant reference cell types, leading to more accurate downstream analyses.

DOI 10.64898/2025.12.11.693812

humanscRNA-seq

𝕏 PostBluesky

BioinformaticsNucleic Acids ResearchPeer-reviewedOct 10, 2025

DeepSpaceDB: a spatial transcriptomics atlas for interactive in-depth analysis of tissues and tissue microenvironments

Vladyslav Honcharuk, Afeefa Zainab, Yoshiya Horimoto…·Alexis Vandenbon

DeepSpaceDB provides an interactive spatial transcriptomics database with advanced analysis tools for comparing gene expression across tissue regions and samples.

8 citations

mousespatial transcriptomics

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