Author

Ben J. Marais

The University of SydneyORCID 0000-0003-3404-2690Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Organism:human· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Approach:experimental assay· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Arnold BainomugisaiD· 2 shared Evelyn Lavu· 2 shared Lachlan J. M. CoiniD· 2 shared Alice Honjepari· 1 shared Chris Coulter· 1 shared Christopher Coulter· 1 shared Elena M. MartineziD· 1 shared Gopalan NarendraniD· 1 shared

Activity by Year

2017-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersGenomics

Arnold BainomugisaORCID

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3 papers

Recent·Most cited

GenomicsInternational Journal of Infectious DiseasesPeer-reviewedMar 18, 2021

Whole genome sequencing based differentiation between re-infection and relapse in Indian patients with tuberculosis recurrence, with and without HIV co-infection

Sivakumar Shanmugam, Nathan L. Bachmann, Elena M. Martinez…·Vitali Sintchenko

This study uses whole genome sequencing to differentiate between TB relapse and re-infection in HIV-positive and negative patients, finding 95% relapse in HIV-negative and 75% re-infection in HIV-positive cases.

15 citations

humanwhole-genome sequencing

𝕏 PostBluesky

GenomicsMicrobial GenomicsPeer-reviewedJun 15, 2018

A complete nanonpore-only assembly of an XDR Mycobacterium tuberculosis Beijing lineage strain identifies novel genetic variation in repetitive PE/PPE gene regions

Arnold Bainomugisa, Tânia Duarte, Evelyn Lavu…·Lachlan Coin

The paper assembles a complete genome of an XDR M. tuberculosis strain using Nanopore sequencing, identifies novel genetic variations in repetitive PE/PPE regions, and links these to drug resistance and virulence.

58 citationstop 2%

whole-genome sequencingexperimental assay

𝕏 PostBluesky

MicrobiologybioRxivPreprintAug 4, 2017

Multi-clonal evolution of MDR/XDR M. tuberculosis in a high prevalence setting in Papua New Guinea over three decades

Arnold Bainomugisa, Evelyn Lavu, Stenard Hiashiri…·Lachlan J. M. Coin

The paper analyzes MDR/XDR M. tuberculosis evolution in Papua New Guinea over three decades, identifying key resistance mutations and transmission patterns.

DOI 10.1101/172601

humanwhole-genome sequencing

𝕏 PostBluesky