Author

Hakan Inan

Stanford UniversityORCID 0000-0003-3505-8838Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Neuroscience· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:imaging· 2 Organism:mouse· 2 Research Focus:benchmarking· 1 Approach:machine learning (classical)· 1 Approach:matrix factorization· 1 Approach:simulation· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Mark J. SchnitzeriD· 2 shared Oscar HernandeziD· 2 shared Yanping ZhangiD· 2 shared Biafra AhanonuiD· 1 shared Christopher MirandaiD· 1 shared Claudia SchmuckermairiD· 1 shared Fatih DinçiD· 1 shared Fatih Dinct· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersNeuroscience

Mark J. SchnitzerORCID

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2 papers

Recent·Most cited

Neuroscienceneural information processing systemsPeer-reviewedJan 1, 2024

ActSort: An active-learning accelerated cell sorting algorithm for large-scale calcium imaging datasets

Yiqi Jiang, Hakki Orhun Akengin, Ji Zhou…·Mark J. Schnitzer

ActSort reduces human labor in cell sorting for calcium imaging by 1-3% and improves accuracy through active learning and expert features.

DOI 10.52202/079017-2511

𝕏 PostBluesky

NeurosciencebioRxivPreprintMar 24, 2021

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Fast, scalable, and statistically robust cell extraction from large-scale neural calcium imaging datasets

Fatih Dinç, Hakan Inan, Oscar Hernandez…·Mark J. Schnitzer

EXTRACT, a GPU-based cell extraction method using one-sided Huber robust regression, processed 199 Allen Brain Observatory sessions (~12 TB) in a day and gave cleaner traces than CAIMAN or CNMF-E.

51 citations

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