Marko Budinich

The paper develops a genome-scale metabolic model for ocean microbial communities to infer metabolic processes and viral impacts on biogeochemical cycles.

This paper models host-microbiota interactions using in silico metabolic models and multi-objective optimization to predict microbial interaction types and quantify their effects on epithelial cell maintenance.

This paper compares the impact of using single vs. multiple compartments in microbial community modeling using flux module analysis on two microbial systems.