Author

Amina Echchiki

SIB Swiss Institute of BioinformaticsORCID 0000-0003-3571-5420Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Assay:long-read sequencing· 1 Organism:multiple species· 1

Frequent Co-Authors

Julien RouxiD· 2 shared Angélique Escoriza· 1 shared Anne NiknejadiD· 1 shared Aurélie ComteiD· 1 shared Balazs LaurenczyiD· 1 shared Emilie Person· 1 shared Frederic BastianiD· 1 shared Gilles Parmentier· 1 shared

Activity by Year

2017-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Julien RouxORCID

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2 papers

Recent·Most cited

BioinformaticsNucleic Acids ResearchPeer-reviewedSep 15, 2020

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

Frederic Bastian, Julien Roux, Anne Niknejad…·Marc Robinson‐Rechavi

Bgee provides an integrated expression atlas and comparative transcriptomics resource for multiple animal species using curated healthy wild-type expression data.

189 citationstop 1%

multiple speciesbulk RNA-seq

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedOct 18, 2017

Evaluation of tools for long read RNA-seq splice-aware alignment

Krešimir Križanović, Amina Echchiki, Julien Roux, Mile Šikić

This study evaluates RNA-seq splice-aware alignment tools for long-read sequencing technologies, showing that some tools perform well with error correction.

76 citationstop 4%

long-read sequencingbulk RNA-seq

𝕏 PostBluesky