Author

Anne Niknejad

SIB Swiss Institute of BioinformaticsORCID 0000-0003-3308-6245Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1 Assay:metabolomics· 1 Organism:multiple species· 1

Frequent Co-Authors

Sébastien MorettiiD· 2 shared Alan Bridge· 1 shared Amina EchchikiiD· 1 shared Angélique Escoriza· 1 shared Aurélie ComteiD· 1 shared Balazs LaurenczyiD· 1 shared Emilie Person· 1 shared Filippo MartinelliiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersSystems Biology

Sébastien MorettiORCID

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2 papers

Recent·Most cited

Systems BiologyJournal of CheminformaticsPeer-reviewedOct 10, 2026

StereoMapper: Clarifying Metabolite Identity Through Stereochemically Aware Relationship Assignment

Jack McGoldrick, Marco Pagni, Saleh Alwer…·Ronan M. T. Fleming

StereoMapper clarifies metabolite identity by assigning stereochemically aware relationships, achieving high performance in benchmark datasets and improving GEM accuracy.

DOI 10.1186/s13321-026-01278-3

metabolomicsstatistical model

𝕏 PostBluesky

BioinformaticsNucleic Acids ResearchPeer-reviewedSep 15, 2020

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

Frederic Bastian, Julien Roux, Anne Niknejad…·Marc Robinson‐Rechavi

Bgee provides an integrated expression atlas and comparative transcriptomics resource for multiple animal species using curated healthy wild-type expression data.

189 citationstop 1%

multiple speciesbulk RNA-seq

𝕏 PostBluesky