Author

Paulo Da Silva Cordeiro

Harvard UniversityORCID 0000-0003-3750-5582Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:ChIP-seq· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Damien VasseuriD· 2 shared Gunsagar Singh GulatiiD· 2 shared Hunter SavignanoiD· 2 shared Ji-Heui SeoiD· 2 shared John CanniffiD· 2 shared Karl SemaaniD· 2 shared Marc EidiD· 2 shared Matthew L. FreedmaniD· 2 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Damien VasseurORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintFeb 19, 2026

Integrated inference of cancer gene expression from cell-free plasma chromatin

Gunsagar Singh Gulati, Damien Vasseur, Rashad Nawfal…·Matthew L. Freedman

APEX infers cancer gene expression from plasma cfChIP-seq data, outperforming existing methods and enabling subtype classification and biomarker identification.

2 citations

humanChIP-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintDec 30, 2025

SNAP: Streamlined Nextflow Analysis Pipeline for Immunoprecipitation-Based Epigenomic Profiling of Circulating Chromatin

Ze Zhang, Paulo Da Silva Cordeiro, Surya B. Chhetri…·Sylvan C. Baca

SNAP improves classification performance for cell-free chromatin data while maintaining data retention through optimized quality filters and modular design.

3 citations

humanATAC-seq

𝕏 PostBluesky