Author

Sami Nourreddine

University of California San DiegoORCID 0000-0003-3881-7588Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioengineering· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Assay:CRISPR screen· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Amir DailamyiD· 2 shared Antoine ForgetiD· 2 shared Emma K. LundbergiD· 2 shared Jake Y. CheniD· 2 shared Jan N. HanseniD· 2 shared Kirsten ObernieriD· 2 shared Prashant MaliiD· 2 shared Yesh DoctoriD· 2 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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2 shared papersBioengineering

Amir DailamyORCID

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2 papers

Recent·Most cited

BioengineeringNature BiotechnologyPeer-reviewedJul 1, 2026

A PERTURBATION CELL ATLAS OF HUMAN INDUCED PLURIPOTENT STEM CELLS

Sami Nourreddine, Yesh Doctor, Amir Dailamy…·Prashant Mali

The paper generates a CRISPRi perturbation cell atlas in human induced pluripotent stem cells, identifies novel regulators of pluripotency and metabolism, and proposes a machine learning framework for predicting perturbation recipes.

12 citationstop 1%

humanCRISPR screen

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Systems BiologybioRxivPreprintMay 21, 2024

Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines

Timothy Clark, Jillian Mohan, Leah V. Schaffer…·Trey E. Ideker

The paper introduces the CM4AI project, which aims to create AI-ready datasets of human cell architecture using multimodal data from cell lines.

14 citations

humanbulk RNA-seq

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