Author

Andrew B. Nixon

Duke UniversityORCID 0000-0003-3971-2964Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:eQTL / molecular QTL mapping· 1

Frequent Co-Authors

Cliburn C. W. ChaniD· 2 shared Jichun XieiD· 2 shared Alan Paul VenookiD· 1 shared Alexander B. SibleyiD· 1 shared Bert H. O’NeiliD· 1 shared Bing JiiD· 1 shared Carolyn GlassiD· 1 shared Dongmei LiiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersBioinformatics

Cliburn C. W. ChanORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

BioinformaticsCell GenomicsPeer-reviewedOct 7, 2025

Single-cell and spatial detection of senescent cells using DeepScence

Yilong Qu, Bing Ji, Runze Dong…·Zhicheng Ji

DeepScence identifies senescent cells in single-cell and spatial transcriptomics data, outperforming existing methods.

30 citationstop 1%

scRNA-seqspatial transcriptomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 3, 2024

Marker gene fishing for single-cell data with complex heterogeneity

Yiren Shao, Qi Gao, Liuyang Wang…·Jichun Xie

B-Lightning identifies marker genes and cell subpopulations for specific sources of heterogeneity while filtering out confounding factors, improving sensitivity and robustness in single-cell data analysis.

DOI 10.1101/2024.11.03.621735

𝕏 PostBluesky

Genetic & Genomic MedicineBMC GenomicsPeer-reviewedMay 14, 2024

Common variation in a long non-coding RNA gene modulates variation of circulating TGF-β2 levels in metastatic colorectal cancer patients (Alliance)

Júlia C.F. Quintanilha, Alexander B. Sibley, Yingmiao Liu…·Kouros Owzar

The paper identifies a novel cis-pQTL in LINC02869 associated with TGF-β2 levels in mCRC patients and validates it in prostate cancer patients.

2 citations

humanGWAS summary statistics

𝕏 PostBluesky