Junhai Qi

WattmaMod detects multiple RNA modifications from nanopore sequencing data using deep learning, achieving high accuracy and extending to low-resource modifications.

centroAnno is a de novo algorithm for centromere annotation that outperforms existing tools in accuracy and efficiency on simulated and real datasets.

PGAR-Zernike provides a fast and accurate open-source toolkit for computing Zernike descriptors of protein structures, enabling efficient structural database construction and retrieval.

This paper introduces a hybrid unsupervised method for accurate short read clustering and barcoded sample demultiplexing in nanopore sequencing, outperforming traditional tools in clustering and matching learning-based methods in demultiplexing.