Author

Sanjay V. Malhotra

Oregon Health & Science UniversityORCID 0000-0003-4056-5033Unclaimed ORCID profile · follow to get notified of new preprints

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Sanjay V. Malhotra1 paper

Biology Disciplines

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Cancer Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Assay:scRNA-seq· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Alexander T. HonkalaiD· 1 shared Anshu Kumar YadaviD· 1 shared Deepak GuptaiD· 1 shared Deepali MishraiD· 1 shared Dhanir TailoriD· 1 shared Hitesh VermaiD· 1 shared Jee Min LeeiD· 1 shared Jyoti PandeyiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperSystems Biology

Alexander T. HonkalaORCID

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2 papers

Recent·Most cited

Systems BiologybioRxivPreprintDec 29, 2025

Python Encoders for Archetypal Convex Hulls (PEACH): PyTorch-Based Archetypal Analysis

Alexander T. Honkala, Sanjay V. Malhotra

PEACH is a PyTorch-based archetype analysis tool for scRNA-seq data that identifies pure extremal cell states and their tradeoffs using a constrained autoencoder.

DOI 10.64898/2025.12.29.696912

scRNA-seqdeep learning

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Cancer BiologyCell Communication and SignalingPeer-reviewedDec 12, 2025

Clonal spheroids capture functional and genetic heterogeneity of head and neck cancer

Jyoti Pandey, Md. Zubbair Malik, Ritis Kumar Shyanti…·Rana Pratap Singh

This study generates and characterizes single-cell-derived spheroids from head and neck cancer cells to reveal functional and genetic heterogeneity.

2 citations

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