Author

Marcell Veiner

Institute for Research in BiomedicineORCID 0000-0003-4179-1374Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 3 Organism:human· 3 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Approach:machine learning (classical)· 2 Approach:transformer / foundation model· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Fran SupekiD· 3 shared Iván Galván‐FemeníaiD· 2 shared Ben LehneriD· 1 shared Daniel NaroiD· 1 shared Guillermo Palou-MárqueziD· 1 shared Ignasi ToledanoiD· 1 shared Marina SalvadoresiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 11 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersGenomics

Fran SupekORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

GenomicsbioRxivPreprintJul 10, 2026

Transformer models of mutation risk at base-pair resolution identify non-coding hotspot cancer driver mutations

Iván Galván‐Femenía, Marcell Veiner, Daniel Naro, Fran Supek

The paper develops MutFormer, a transformer model to predict non-coding cancer driver mutations at base-pair resolution using DNA sequence and mutational signatures.

DOI 10.64898/2026.07.07.736824

humanwhole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintMar 26, 2026

Quantitative prediction of nonsense-mediated mRNA decay across human genes by genomic language model and large-scale mutational scanning

Marcell Veiner, Ignasi Toledano, Guillermo Palou-Márquez…·Fran Supek

The paper develops a model to predict nonsense-mediated mRNA decay (NMD) across human genes using genomic data and mutational scanning, showing improved accuracy and revealing quantitative rules of NMD implementation.

4 citations

humanbulk RNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintDec 29, 2025

Intrinsic DNA sequence determinants and tissue-specific regulation of human replication origins

Marcell Veiner, Marina Salvadores, Iván Galván‐Femenía, Fran Supek

The paper develops ORIFormer and MuSAS to predict and map human replication origins, revealing DNA sequence determinants and tissue-specific regulation through chromatin accessibility.

DOI 10.64898/2025.12.28.696672

humanDNA methylation

𝕏 PostBluesky