Author

Seungchan Kim

Prairie View A&M UniversityORCID 0000-0003-4183-4338Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:imaging· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Michael E. BerensiD· 3 shared Jonathan R. Adkins· 2 shared Rebecca F. HalperiniD· 2 shared Sara Ann ByroniD· 2 shared Winnie S. LiangiD· 2 shared Andrew Edward SloaniD· 1 shared Anup SoodiD· 1 shared Chinnappa D. Kodira· 1 shared

Activity by Year

2018-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersGenomics

Michael E. BerensORCID

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3 papers

Recent·Most cited

GenomicsPLoS ONEPeer-reviewedDec 27, 2019

Tumor cell phenotype and heterogeneity differences in IDH1 mutant vs wild-type gliomas

Michael E. Berens, Anup Sood, Jill S. Barnholtz‐Sloan…·Fiona Ginty

This study compares tumor cell phenotype and heterogeneity differences between IDH1 mutant and wild-type gliomas using integrated multi-omics data.

39 citations

humanbulk RNA-seq

𝕏 PostBluesky

GenomicsIEEE International Conference on Bioinformatics and Biomedicine (BIBM)Peer-reviewedNov 1, 2019

Probing glioblastoma and its microenvironment using single-nucleus and single-cell sequencing

Sen Peng, Sanhita Rath, Connor Vuong…·Harshil Dhruv

The paper uses single-cell and single-nucleus sequencing to analyze glioblastoma microenvironment composition and interactions, identifying diverse cell types and pathway rewiring.

2 citations

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJul 9, 2018

Joint analysis of matched tumor samples with varying tumor contents improves somatic variant calling in the absence of a germline sample

Rebecca F. Halperin, Winnie S. Liang, Sidharth Kulkarni…·Sara Ann Byron

LumosVar 2.0 improves somatic variant calling by jointly analyzing tumor and adjacent normal samples without a germline reference.

1 citation

humanwhole-exome sequencing

𝕏 PostBluesky