Arber Qoku

Deep proteomics of 997 treatment-naïve colorectal cancers defines six subgroups, splitting chromosomally unstable tumors into three and revealing a rare adverse subgroup, with H&E slide benchmarks.

PACMON integrates multi-omics data from perturbation screens to infer pathway-level responses to experimental perturbations, achieving high accuracy and scalability.

MOFA-FLEX is a flexible factor analysis framework that integrates multi-omics data with prior knowledge, improving robustness and disentangling variation in scRNA-seq and CITE-seq data.