Author

Karen Clark

National Institutes of HealthORCID 0000-0003-4403-1477Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:genome assembly· 2 Organism:multiple species· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Approach:simulation· 1

Frequent Co-Authors

Alan TraceyiD· 1 shared Alex R. HastieiD· 1 shared Alexander Astashyn· 1 shared Andreas F. KauttiD· 1 shared Andrew DigbyiD· 1 shared Ann C. MisuracaiD· 1 shared Arang RhieiD· 1 shared Arkarachai FungtammasaniD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperGenomics

Alan TraceyORCID

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2 papers

Recent·Most cited

BioinformaticsGenome biologyPeer-reviewedFeb 26, 2024

✦ In-depth digest

Rapid and sensitive detection of genome contamination at scale with FCS-GX

Alexander Astashyn, Eric S. Tvedte, Deacon Sweeney…·Terence D. Murphy

FCS-GX, a hashed k-mer cross-species aligner with a 709 Gbp curated database, screens most genomes in 0.1-10 minutes and flagged 36.8 Gbp of contamination in GenBank.

481 citationstop 1%

multiple specieswhole-genome sequencing

𝕏 PostBluesky

GenomicsNaturePeer-reviewedApr 28, 2021

Towards complete and error-free genome assemblies of all vertebrate species

Arang Rhie, Shane McCarthy, Olivier D. Fedrigo…·Hiram Clawson

The paper summarizes methods and lessons from assembling 16 vertebrate genomes, highlights the importance of long-read sequencing, and introduces the Vertebrate Genomes Project to generate complete reference genomes for all vertebrate species.

3,136 citationstop 1%

multiple specieswhole-genome sequencing

𝕏 PostBluesky